PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60153.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 167aa    MW: 18386.7 Da    PI: 9.7845
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60153.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.82.1e-4091472128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                   +pGfrF Pt++el+ +yL+++++g++  ++++vi+ vd+y+++P++L++    +  ++ ++w+fF++r++++ +g r+ r+t sgyWkatg+   v+
  MLOC_60153.1   9 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSYHPSHLRAmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWKATGSPSCVF 105
                   59*********************9995666678**************8434532223566************************************* PP

           NAM  94 sk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   s+       +++++g+k+t+vfy+grap+g kt+W m+ey++
  MLOC_60153.1 106 SSsssaagsNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 147
                   9988888877788***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-425151IPR003441NAC domain
PROSITE profilePS5100541.7068167IPR003441NAC domain
PfamPF023658.8E-2310146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MTTPSSGGTP GFRFYPTEDE LLGFYLRHRL AGTTRPHVDR VIPVVDVYSY HPSHLRAMAG  60
EASVQDAEQW FFFCPRAERE LRGGRPARTT PSGYWKATGS PSCVFSSSSS AAGSNSKVIG  120
VKRTMVFYQG RAPTGAKTTW KMNEYKAVAA DYDTMTGHQT PAPLRAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-271014819143NO APICAL MERISTEM PROTEIN
1ut4_B5e-271014819143NO APICAL MERISTEM PROTEIN
1ut7_A5e-271014819143NO APICAL MERISTEM PROTEIN
1ut7_B5e-271014819143NO APICAL MERISTEM PROTEIN
3swm_A4e-271014822146NAC domain-containing protein 19
3swm_B4e-271014822146NAC domain-containing protein 19
3swm_C4e-271014822146NAC domain-containing protein 19
3swm_D4e-271014822146NAC domain-containing protein 19
3swp_A4e-271014822146NAC domain-containing protein 19
3swp_B4e-271014822146NAC domain-containing protein 19
3swp_C4e-271014822146NAC domain-containing protein 19
3swp_D4e-271014822146NAC domain-containing protein 19
4dul_A5e-271014819143NAC domain-containing protein 19
4dul_B5e-271014819143NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942451e-31FP094245.1 Phyllostachys edulis cDNA clone: bphylf035k07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662743.13e-79PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR33e-57NAC90_ARATH; NAC domain-containing protein 90
TrEMBLM0XHT31e-122M0XHT3_HORVD; Uncharacterized protein
STRINGMLOC_60153.11e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-52NAC domain containing protein 90